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Cleanrooms 101

SOSCleanroom Education Center 101
Cleanrooms and ISO Standards
What they are, why they matter, and how teams keep controlled environments stable, repeatable, and audit-ready
Last updated: January 10, 2026  |  By: SOSCleanroom


A cleanroom is a controlled environment designed to limit contamination—especially tiny airborne particles you may not be able to see, such as dust, fibers, skin flakes, and residue from everyday materials. In some industries (especially pharmaceutical and biotech environments), contamination can also include microorganisms like bacteria and fungi.

Cleanrooms exist because in modern manufacturing and science, contamination that looks “small” in everyday life can cause serious issues—product defects, equipment failures, safety risks, and regulatory non-compliance. At SOSCleanroom, we help organizations interpret cleanroom expectations and support long-term control through best-in-class consumables and practical, field-tested guidance.

In One Sentence
A cleanroom is an engineered environment built to reduce contamination, control it day-to-day, and prove it with measurements and records.
Clean vs ISO-classified
“ISO-classified” means air cleanliness has been measured against ISO particle limits and documented. It turns “clean” into a number.

“Clean” vs. “ISO-classified” - What is the Difference?

Many rooms can look clean. Fewer rooms are measurably clean.

When someone says a room is “clean”, that can be subjective. When a room is “ISO-classified”, it means the room’s air cleanliness has been measured and shown to meet a specific cleanliness level defined by an international standard.

In practical terms: ISO classification turns “clean” into a number—based on particle counts in a measured volume of air.


Does a Cleanroom Mean “Sterile”?

Not automatically.

A cleanroom typically refers to controlling airborne particles (and sometimes microorganisms, depending on the industry). Sterile refers to the validated absence of viable microorganisms to a defined sterility assurance level, which generally requires validated sterilization methods, microbiological control programs, and stricter operational controls.

In other words: sterile areas are highly controlled, but not all cleanrooms are sterile.


What ISO Means and What ISO Cleanroom Classes Mean

ISO stands for the International Organization for Standardization. ISO publishes international standards so customers, suppliers, and auditors can align on consistent requirements globally.

ISO 14644 is the primary family of cleanroom standards used worldwide. Different parts of ISO 14644 address classification, testing, monitoring, and operations (day-to-day practices used to keep cleanroom performance in control).

What do ISO 5, ISO 7, and ISO 8 mean? These are air cleanliness classes based on particle limits in the air.

  • Lower number = cleaner air (fewer particles allowed)
  • Higher number = less strict (more particles allowed)
Common ISO classes 
ISO Class Typical Use Operational Reality
ISO 8 Controlled support, staging, packaging where risk is lower Housekeeping + material controls drive outcomes
ISO 7 Common controlled manufacturing rooms; many regulated support areas People/material discipline matter as much as design
ISO 6 Higher-control processes with elevated contamination risk Tighter behavior, stronger controls, more monitoring/trending
ISO 5 Critical zones for exposed product/process (often under unidirectional airflow) Interventions are the risk; protect clean air paths (“first air”)
Note: Class alone does not make an operation compliant. Regulated programs typically require documented controls, training, validated cleaning/disinfection, and monitoring/trending matched to risk.

Why standards matter: Standards make “clean” measurable and help global teams maintain consistent expectations for quality and control.


ISO vs USP vs EU GMP and Which Standards Apply

Cleanroom programs often reference multiple standards. The key is understanding what each one is designed to control. ISO tells you how clean the air measures; USP tells you how compounding is performed and controlled; and EU GMP Annex 1 tells you how sterile medicines are expected to be manufactured and controlled in the EU market.

Which standard applies to you? 
Which standard most often governs your program? What type of work are you doing? Pick the lane that matches your operation Compounding (U.S.) Pharmacy sterile / nonsterile Sterile medicinal products (EU) Aseptic processing / sterile fill Industrial / device / electronics Clean manufacturing / assembly Primary: USP <795> / <797> If hazardous drugs: USP <800> ISO terms may describe area - USP pharma . Primary: EU GMP Annex 1EU GMP Annex 1EU GMP Annex 1 EU GMP Annex 1 CCS, Grades A–D, monitoring, interventions, barrier strategy. . Primary baseline: ISO 14644 Classification/testing + customer specs. Add industry/regulatory requirements
Caption: This guide shows which framework typically governs your program. Many facilities reference more than one standard, but they are not interchangeable.
Framework What it is primarily for What it typically covers 
ISO 14644 Global cleanroom classification and testing framework Air cleanliness classification by particle concentration; qualification and testing concepts used broadly in cleanroom design and verification
USP <795> U.S. nonsterile compounding in healthcare settings Standards for compounding quality nonsterile preparations to reduce contamination, dosing, and quality risks (revised chapter official date: Nov 1, 2023)
USP <797> U.S. sterile compounding in healthcare settings Sterile compounding requirements: personnel qualification, aseptic technique, facilities, cleaning/disinfection, and environmental controls (revised chapter official date: Nov 1, 2023)
USP <800> U.S. hazardous drug handling safety Requirements to minimize exposure to hazardous drugs for personnel, patients, and the environment (USP lists an official date of Dec 1, 2019; adoption/enforcement depends on state and site policy)
EU GMP Annex 1 EU expectations for sterile medicinal manufacturing CCS, Grades A–D, aseptic process controls, barrier emphasis, and monitoring/trending expectations (in operation: Aug 25, 2023; point 8.123: Aug 25, 2024)
Clarity: ISO classifies air cleanliness; USP and EU GMP define required practices, controls, and documentation—often using ISO terms, but not replacing them.
If you make or do... You most often live in... Day-to-day risk focus
Compounded medications (nonsterile or sterile) USP <795> / <797> (and <800> when hazardous drugs are involved) Technique, cleaning/disinfection, documentation, and consistent execution across staff
Sterile medicinal products for the EU market EU GMP Annex 1 (often referencing ISO concepts in qualification) CCS, interventions, monitoring/trending, barrier strategy, and process control
Industrial manufacturing (devices, electronics, optics, aerospace, etc.) ISO 14644 + customer/industry requirements Particles, residues, material discipline, and repeatable cleaning methods

Grades vs ISO Classes and Why Mapping is NOT Automatic

A common misconception is that EU GMP Annex 1 Grades (A, B, C, D) are simply another way of saying ISO 5/7/8. In practice, they are not interchangeable labels and should not be treated as a one-to-one conversion.

What ISO class describes What Annex 1 Grade describes Why it matters
A measured air cleanliness level based on particle limits and sampling conditions A risk-based zone concept for sterile manufacturing, tied to criticality, interventions, CCS, and monitoring expectations You can meet an ISO class and still fail a Grade expectation if interventions, monitoring, or CCS controls are weak
Usually focuses on non-viable particles (plus defined testing/verification practices) Includes strong emphasis on process control, microbiological control (as applicable), and routine trend review Sterile operations require evidence of sustained control, not just a passing classification test
Often applied across many industries (devices, electronics, pharma support areas) Specifically written for sterile medicinal products under EU regulation When Annex 1 applies, your program must be justified through CCS, barrier strategy (where appropriate), and monitoring/trending aligned to sterile risk

Practical takeaway: Many sterile programs align Grade A to the highest-control environments and may reference ISO terms in qualification, but the correct approach is to start with the governing framework (Annex 1 / USP / ISO), define risk-based controls, and then demonstrate performance with documented evidence and trends.


Key Definitions 
Term What it means Why it matters
ISO class A numeric air cleanliness level based on particle limits measured in a defined volume of air Turns “clean” into a measurable requirement and supports qualification
At rest / In operation At rest: running/ready without people; In operation: actual work with people and interventions Most real contamination problems show up in operation
First air The clean, uninterrupted air path coming from a HEPA filter to the critical work area Blocking first air is a common root cause of findings and contamination events
Viable vs non-viable Viable: living microorganisms; Non-viable: particles (dust/fibers/skin) without life Sterile programs must manage both; industrial programs often focus on particles + residues
CCS (Contamination Control Strategy) A documented plan linking contamination risks to controls across people, materials, facility, equipment, cleaning, and monitoring Annex 1 expects CCS as the backbone of sterile contamination control maturity

EU GMP Annex 1 and How it Affects European Cleanrooms 

In the United States, many sterile manufacturing expectations are driven by FDA current Good Manufacturing Practice (cGMP) regulations and guidance. Globally, another major benchmark is the European Union’s EU GMP Annex 1, titled “Manufacture of Sterile Medicinal Products.”

Important clarity for U.S. readers: EU GMP Annex 1 is a European requirement for EU-regulated sterile medicinal products. It is not a U.S. law. However, many global manufacturers use Annex 1 as a high bar for contamination control and as a practical reference when designing and operating sterile areas.

Timeline: Annex 1 came into operation on August 25, 2023, with a later deadline of August 25, 2024 for point 8.123.

At rest vs in operation 
At rest Equipment ready; no operators; no interventions. In operation Operators present; materials move; interventions occur. Work zone Work zone Baseline verification Materials
Caption: At-rest data establishes baseline performance. In-operation performance reflects real risk because people and materials generate contamination and disrupt airflow.

Key Annex 1 concepts that influence sterile cleanroom programs:

  • Grades A, B, C, and D: Grade A is the highest-control zone for critical exposed sterile work; Grades B–D support with decreasing levels of control.
  • “At rest” vs. “in operation”: performance is evaluated both without operators and during real work with interventions.
  • CCS (Contamination Control Strategy): a documented plan connecting risks and controls across facility, equipment, utilities, people, materials, cleaning/disinfection, and monitoring.
  • Barrier emphasis where appropriate: RABS and isolators reduce direct human interventions in critical zones.
  • Monitoring and trends: monitoring is designed to detect drift early and reviewed routinely.
  • Validated cleaning/disinfection: risk-based validation and practical rotation strategies (including sporicidal use where appropriate).

HEPA/Airflow and How Cleanrooms Actually Stay Clean

Most cleanrooms win or lose on two fundamentals: filtration and airflow behavior. A cleanroom is not a sealed box; it is a controlled airflow system designed to dilute, capture, and remove contamination as it is generated.

  • HEPA (and sometimes ULPA) filtration removes particles from supply air before it enters the controlled space.
  • Unidirectional airflow is commonly used over critical work to help sweep particles away from product/process pathways.
  • Mixed airflow rooms rely on dilution and returns; good behavior and material discipline become even more important.
  • Practical rule: avoid blocking clean air paths with hands, boxes, carts, or poorly staged materials near critical work.
Protect first air (don’t block the clean air path)
Incorrect staging Blocks first air HEPA / supply Critical work surface Hands / materials Result: airflow disturbed at the critical zone. Correct staging Protects first air HEPA / supply Critical work surface Staged Result: clean air stays over the critical zone.
Caption: The highest-control areas depend on uninterrupted clean air. Staging and hand placement can either protect or disrupt that path.

Gowning and Behavior: The Biggest Routine Contamination Source is Still PEOPLE

People are the largest routine generator of particles and viable contamination in controlled environments. Good gowning reduces shedding, but behavior is what keeps control stable from shift to shift.

Common issue What it causes What to do
Blocking airflow with hands/materials Particles settle in critical areas Stage low and to the side; protect clean air paths
Fast motion / unnecessary traffic Resuspension + higher counts Slow movement; define roles; minimize entries/exits
Uncontrolled touch points (doors/carts/keyboards) Transfer contamination Define “dirty vs clean” surfaces; glove changes between tasks
Consumables not matched to the job Residues, fibers, or chemistry mismatch Use appropriate wipers/swabs/chemistry; document rationale

Monitoring and Verification: How to Prove Control and Catch Drift

Cleanroom performance is demonstrated with data. Strong programs do not wait for an audit to discover drift—they use monitoring to detect changes early and correct before product or compliance is at risk.

  • Classification is periodic verification; monitoring is ongoing drift detection.
  • Routine monitoring: trend review with defined response actions and documentation.
  • Common elements: particles, pressure, temperature/humidity, alarms; viable monitoring in sterile programs as required.
  • Operational truth: “in operation” drift is often a people/material control issue, not just HVAC.

Consumables Which Support Control 

Cleanrooms are maintained by design, but they are stabilized by what teams use every day. The right consumables reduce shedding, residues, and variability—and make procedures easier to execute consistently.

Category What to look for Where it matters most Common failure mode
Wipers Low-lint, compatible material, consistent absorbency, sterile options where required Surface cleaning, critical wipe-downs, residue control Fiber shedding or incomplete removal leaves films/streaks that recur
Swabs Head compatibility, strong bonding, low particles, precision shapes; ESD options when needed Tight areas, equipment edges, seams, sensor cavities, connectors Over-wetting spreads soils; weak heads shed
Solutions Residue profile, contact time, validated use case; sterile grades where required Cleaning/disinfection programs, wipe saturation control, rotation strategies Chemistry mismatch causes residue films or ineffective disinfection
Gloves & apparel Barrier + low shedding, fit/dexterity, sterile options, accelerator-free options when needed People controls, touch-point control, aseptic technique support No glove-change triggers = contamination transfer between tasks
Mops Head material, coverage efficiency, solution compatibility, controlled wetness Floors/walls, large-surface cleaning, routine sanitation, transitions Too wet or wrong technique pushes soils; inconsistent coverage leaves “dirty lanes”

Practical tip: The most stable programs define the consumables used for each task in the SOP (not just “wipe with IPA”) so results are repeatable across shifts and sites.


Common Cleanroom Mistakes That Trigger Findings 
  • Uncontrolled staging: reaching over critical work, blocking clean air paths, placing materials too high or too close to exposed product.
  • Over-wetting: spreading soils into seams/edges and leaving residues that become recurring film issues.
  • No glove-change triggers: the same gloves touch doors, carts, keyboards, and critical surfaces.
  • Wrong wipe/swab choice: fibers or weak construction adds contamination while “cleaning.”
  • Chemistry mismatch: residues, incomplete soil removal, or disinfectant use without a defensible rationale and records.
  • Data without ownership: monitoring exists, but trend review and response actions are not clearly assigned or documented.

Documentation References 

SOSCleanroom is the source for this educational entry.
Reviewed by SOSCleanroom staff for practical accuracy and day-to-day usability.
Questions? Email Sales@SOSsupply.com or call (214) 340-8574.
Educational disclaimer: This content is provided for general cleanroom education and process awareness. It does not constitute legal, regulatory, quality, engineering, or safety advice, and it does not replace your governing standard(s), site SOPs, validation strategy, Quality Unit decisions, or professional consultation. Requirements and interpretations can vary by industry, product risk, and jurisdiction. Always follow your approved procedures and applicable regulations.
Last reviewed: January 10, 2026
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